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microarray gene expression data  (Thermo Fisher)


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    Structured Review

    Thermo Fisher microarray gene expression data
    Microarray Gene Expression Data, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/gene+expression+microarray+data/pmc11583955-44-9-8
    Average 90 stars, based on 1 article reviews
    microarray gene expression data - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Gene Expression:

    Article Title: Structural and Regulatory Characterization of the Placental Epigenome at Its Maternal Interface
    Article Snippet: Given the potential for DNA methylation patterns to be intimately associated with gene expression, we sought to determine whether T-DMRs identified in the Illumina data were also present as tissue specific differentially transcribed genes (TDTs). .. Thus, we analyzed Affymetrix gene expression microarray data to identify CVS- and MBC-specific TDTs and then analyzed these data using IPA. ..

    Article Title: Comparison of ROS1-rearrangement detection methods in a cohort of surgically resected non-small cell lung carcinomas.
    Article Snippet: Fresh frozen tissue was available for 187 of these patients, and RNA was extracted from these tissue blocks and used in an Affymetrix gene expression microarray analysis. .. Fresh frozen tissue and Affymetrix gene expression microarray data were also available for six additional patients; however, due to a lack of FFPE material for these patients, they were not included in the study population. ..

    Article Title: SplicerAV: a tool for mining microarray expression data for changes in RNA processing
    Article Snippet: .. To fully investigate the potential to detect isoform-specific mRNA changes in conventional gene expression microarray data, we elected to develop a novel method, SplicerAV, which we have applied to conventional Affymetrix gene expression microarray data. .. For the Affymetrix GeneChip Human U133 plus 2.0 arrays, 11,193 genes, which represent 57% of uniquely annotated genes assayed by the array, are interrogated by multiple probesets and can therefore be queried for mRNA isoform changes, with an average of 3.2 probesets interrogating these genes (Table ).

    Article Title: Validation of Novel Prognostic Biomarkers for Early-Stage Clear-Cell, Endometrioid and Mucinous Ovarian Carcinomas Using Immunohistochemistry
    Article Snippet: .. External validation of the biomarkers' clinical relevance was performed using the Kaplan-Meier (KM) plotter online tool ( https://kmplot.com/analysis/ ) for overall survival of ovarian carcinoma patients ( n = 1,657) with Affymetrix gene expression microarray data ( ). ..

    Article Title: ComPlEx: conservation and divergence of co-expression networks in A. thaliana , Populus and O. sativa
    Article Snippet: .. We retrieved all available Affymetrix gene expression microarray data for A. thaliana (At, 6,665 experiments, 19,115 genes, 1,308 transcription factors), Populus (Pt, 462 experiments, 27,793 genes, 1,870 transcription factors) and O. sativa (Os, 711 experiments, 15,470 genes, 957 transcription factors) from the Gene Expression Omnibus (GEO) [ ]. ..

    Article Title: Comparison of ROS1-rearrangement detection methods in a cohort of surgically resected non-small cell lung carcinomas.
    Article Snippet: .. Gene expression microarray data (Affymetrix) and RNA-sequencing data were available for a subset of patients. .. NanoString analyses were performed for samples with positive or ambiguous results (n=21).

    Article Title: Data Integration in Genetics and Genomics: Methods and Challenges
    Article Snippet: .. For example, different approaches are utilized for preprocessing cDNA and Affymetrix gene expression microarray data [ , ]. ..

    Article Title: Epigenetic Restoration of Fetal-like IGF1 Signaling Inhibits Leukemia Stem Cell Activity.
    Article Snippet: .. EZH2 Restricts IGF1 Promoter Access by NOTCH1 in Human Leukemia Cells To ascertain the relevance of these findings to human disease, we first examined publicly available Affymetrix gene expression microarray data from two large T-ALL cohorts totaling 228 patient samples (Homminga et al., 2011; Piovan et al., 2013). ..

    Microarray:

    Article Title: Structural and Regulatory Characterization of the Placental Epigenome at Its Maternal Interface
    Article Snippet: Given the potential for DNA methylation patterns to be intimately associated with gene expression, we sought to determine whether T-DMRs identified in the Illumina data were also present as tissue specific differentially transcribed genes (TDTs). .. Thus, we analyzed Affymetrix gene expression microarray data to identify CVS- and MBC-specific TDTs and then analyzed these data using IPA. ..

    Article Title: Comparison of ROS1-rearrangement detection methods in a cohort of surgically resected non-small cell lung carcinomas.
    Article Snippet: Fresh frozen tissue was available for 187 of these patients, and RNA was extracted from these tissue blocks and used in an Affymetrix gene expression microarray analysis. .. Fresh frozen tissue and Affymetrix gene expression microarray data were also available for six additional patients; however, due to a lack of FFPE material for these patients, they were not included in the study population. ..

    Article Title: SplicerAV: a tool for mining microarray expression data for changes in RNA processing
    Article Snippet: .. To fully investigate the potential to detect isoform-specific mRNA changes in conventional gene expression microarray data, we elected to develop a novel method, SplicerAV, which we have applied to conventional Affymetrix gene expression microarray data. .. For the Affymetrix GeneChip Human U133 plus 2.0 arrays, 11,193 genes, which represent 57% of uniquely annotated genes assayed by the array, are interrogated by multiple probesets and can therefore be queried for mRNA isoform changes, with an average of 3.2 probesets interrogating these genes (Table ).

    Article Title: Validation of Novel Prognostic Biomarkers for Early-Stage Clear-Cell, Endometrioid and Mucinous Ovarian Carcinomas Using Immunohistochemistry
    Article Snippet: .. External validation of the biomarkers' clinical relevance was performed using the Kaplan-Meier (KM) plotter online tool ( https://kmplot.com/analysis/ ) for overall survival of ovarian carcinoma patients ( n = 1,657) with Affymetrix gene expression microarray data ( ). ..

    Article Title: ComPlEx: conservation and divergence of co-expression networks in A. thaliana , Populus and O. sativa
    Article Snippet: .. We retrieved all available Affymetrix gene expression microarray data for A. thaliana (At, 6,665 experiments, 19,115 genes, 1,308 transcription factors), Populus (Pt, 462 experiments, 27,793 genes, 1,870 transcription factors) and O. sativa (Os, 711 experiments, 15,470 genes, 957 transcription factors) from the Gene Expression Omnibus (GEO) [ ]. ..

    Article Title: Comparison of ROS1-rearrangement detection methods in a cohort of surgically resected non-small cell lung carcinomas.
    Article Snippet: .. Gene expression microarray data (Affymetrix) and RNA-sequencing data were available for a subset of patients. .. NanoString analyses were performed for samples with positive or ambiguous results (n=21).

    Article Title: Data Integration in Genetics and Genomics: Methods and Challenges
    Article Snippet: .. For example, different approaches are utilized for preprocessing cDNA and Affymetrix gene expression microarray data [ , ]. ..

    Article Title: Epigenetic Restoration of Fetal-like IGF1 Signaling Inhibits Leukemia Stem Cell Activity.
    Article Snippet: .. EZH2 Restricts IGF1 Promoter Access by NOTCH1 in Human Leukemia Cells To ascertain the relevance of these findings to human disease, we first examined publicly available Affymetrix gene expression microarray data from two large T-ALL cohorts totaling 228 patient samples (Homminga et al., 2011; Piovan et al., 2013). ..

    Indirect Immunoperoxidase Assay:

    Article Title: Structural and Regulatory Characterization of the Placental Epigenome at Its Maternal Interface
    Article Snippet: Given the potential for DNA methylation patterns to be intimately associated with gene expression, we sought to determine whether T-DMRs identified in the Illumina data were also present as tissue specific differentially transcribed genes (TDTs). .. Thus, we analyzed Affymetrix gene expression microarray data to identify CVS- and MBC-specific TDTs and then analyzed these data using IPA. ..

    Formalin-fixed Paraffin-Embedded:

    Article Title: Comparison of ROS1-rearrangement detection methods in a cohort of surgically resected non-small cell lung carcinomas.
    Article Snippet: Fresh frozen tissue was available for 187 of these patients, and RNA was extracted from these tissue blocks and used in an Affymetrix gene expression microarray analysis. .. Fresh frozen tissue and Affymetrix gene expression microarray data were also available for six additional patients; however, due to a lack of FFPE material for these patients, they were not included in the study population. ..

    Biomarker Discovery:

    Article Title: Validation of Novel Prognostic Biomarkers for Early-Stage Clear-Cell, Endometrioid and Mucinous Ovarian Carcinomas Using Immunohistochemistry
    Article Snippet: .. External validation of the biomarkers' clinical relevance was performed using the Kaplan-Meier (KM) plotter online tool ( https://kmplot.com/analysis/ ) for overall survival of ovarian carcinoma patients ( n = 1,657) with Affymetrix gene expression microarray data ( ). ..

    RNA sequencing:

    Article Title: Comparison of ROS1-rearrangement detection methods in a cohort of surgically resected non-small cell lung carcinomas.
    Article Snippet: .. Gene expression microarray data (Affymetrix) and RNA-sequencing data were available for a subset of patients. .. NanoString analyses were performed for samples with positive or ambiguous results (n=21).



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